We would like to complete our description of SOAPdenovo2 commands and get into more interesting topi...

简介 Consed 是一款非常强大的图形化 finish 软件，由 David Gordon 等人于 1998 年发布， 目前已更新至 15.0 版本。 现在 consed 已经成为基因组 finis...

SOAPdenovo2 runs through the following steps - (i) generate the de Bruijn graph and store it (‘pregr...

This commentary is a continuation of previous one. We are adding some additional information in case...

Our earlier commentary on SOAPdenovo2 provided a quick overview of an assembly. In the next few comm...

Opening the zip file: The zip file ‘SOAPdenovo2.zip’ expanded into two programs - i) pregraph_sparse...

N50 statistic is widely used by bioinformaticians to judge the quality of their assemblies, but it i...

We are really amateurs, when it comes to Pacific Bio sequences. How amateur are we? A few weeks back...

We often run Velvet or other de Bruijn assemblers with varying K-mer sizes (21, 23, 25, 27, etc.) to...

一般在基因组组装中，我们常用的拼接方法是，对测序得到的二代数据直接用soapdenovo等软件进行基因组组装。但是这些方法一般只是适用于单一的基因组序列。 最近做的一个课题是从植物混合测序的数据中（核...