SOAPdenovo特点 宏基因组denovo组装软件中SOAPdenovo（http://soap.genomics.org.cn/soapdenovo）的使用较为广泛，其具有组装速度快，N50值较...
基因组组装软件SOAPdenovo安装使用
一．下载并安装这个软件 下载地址进下面，但是下载源码安装总是很困难，我直接下载bin文件可执行程序。 解压进入目录 首先make 然后make install即可 安装总是失败，我也不知道怎么回事，懒...
SOAPdenovo的一个组装过程
我们都知道，测序本身并不难，难就难在基因组的后续组装拼接，因为它涉及到大量需要考虑的问题，如重复、到位、覆盖率等等，于是如何有效的得到最后的序列或者有意义的Scaffold是做基因组面临的一个很大问题...
Testing SOAPdenovo2 Prerelease – V (map and scaff)
We would like to complete our description of SOAPdenovo2 commands and get into more interesting topi...
Testing SOAPdenovo2 Prerelease – IV
SOAPdenovo2 runs through the following steps - (i) generate the de Bruijn graph and store it (‘pregr...
Testing SOAPdenovo2 Prelease Version – III
This commentary is a continuation of previous one. We are adding some additional information in case...
Testing SOAPdenovo2 Pre-release Version II:pregraph_sparse
Our earlier commentary on SOAPdenovo2 provided a quick overview of an assembly. In the next few comm...
Testing SOAPdenovo2 Pre-release Version
Opening the zip file: The zip file ‘SOAPdenovo2.zip’ expanded into two programs - i) pregraph_sparse...
第二代测序数据处理工具软件汇总
Integrated solutions * CLCbio Genomics Workbench – de novo and reference assembly of Sanger, Roche F...
SOAPdenovo拼接参数详解
1. kmer值 kmer值哪个比较好很难说，对不同的数据，用不同的kmer值会有很不同的结果。最好的办法就是测试不同的kmer，然后看结果的N50，找到N50最高的kmer。不过SOAPdenovo...