liftOver

2014/08/09评论2,151

功能：实现不同基因版本的转换。

下载地址：http://hgdownload.cse.ucsc.edu/admin/exe/

使用方法：【从hg18转到hg19】

liftOver your.hg18.bed hg18ToHg19.over.chain Hg19_Files/your.hg19.bed Hg18_Files/unmapp_hg18.bed

#!/bin/bash
for file in *.bed; do
    newfile=${file/%.bed/_hg18.bed}
    unmapp_file=${file/%.bed/_Unmapped.bed}
    liftOver $file hg18ToHg19.over.chain Hg18_Files/$newfile Hg18_Files/$unmapp_file
done

其他资料：

http://genome.sph.umich.edu/wiki/LiftOver

http://www.cnblogs.com/foreverycc/p/3170807.html

http://hgdownload.cse.ucsc.edu/goldenpath/hg19/liftOver/

原文来自:http://www.zilhua.com/906.html

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